R: Internal function for organize the results of wcmdscale...

wcmdscale.org {PCPS}

R Documentation

Internal function for organize the results of wcmdscale function

Description

Internal function for organize the results of wcmdscale function. The function computes dissimilarity indices using the function vegdist and perform Principal Coordinates Analysis (PCoA) using the function wcmdscale. If data is of class dist, the funcion do not computes the dissimilarity indices.

Usage

wcmdscale.org(data, method, squareroot, eig, correlations, ...)

Arguments

`data`	Data matrix or dissimilarities of class dist.
`method`	Method for dissimilarity index, as accepted by `vegdist`.
`squareroot`	Logical argument (TRUE or FALSE) to specify if use square root of dissimilarity index.
`eig`	Logical argument (TRUE or FALSE) to indicates if eigenvalues are returned.
`correlations`	Logical argument (TRUE or FALSE) to indicates if correlations between axis and original data are returned.
`...`	Other arguments passed to wcmdscale function.

Value

`values`	The eigenvalues, relative eigenvalues and cumulative relative eigenvalues.
`vectors`	The principal coordinates.
`correlations`	Correlations between axis and original data.

Author(s)