oneSeed {PCBS}

Nested DMR calling function within within get_all_DMRs(), Get_Novel_DMRs()

Description

Expands one DMR from a single point.

Usage

oneSeed(chroms, seed, resolution, max.size, mincpgs, null_list, Zlim=1)

Arguments

chroms

chromDict() output.

seed

seed value input

resolution

Get_Novel_DMRs arg DMR_resolution

max.size

Get_Novel_DMRs arg QueryLimit

mincpgs

Get_Novel_DMRs arg minCpGs

null_list

get_all_DMRs arg null

Zlim

Get_Novel_DMRs arg minZ

Value

returns a list of two indices, containing a data.frame with the output from a single compressed seed expansion and a data.frame of locus information around the seed expansion, intended for use within the Get_Novel_DMRs() function.