get_all_DMRs {PCBS}

Nested DMR calling function within Get_Novel_DMRs()

Description

Expands DMRs from collapsed seeds iteratively.

Usage

get_all_DMRs(chromDictObj, seeds, res=40, max.dmr.size=3000, min.dmr.cpgs=10,
min.absZscore, null)

Arguments

chromDictObj

chromDict() output.

seeds

compressed seeds

res

Get_Novel_DMRs arg DMR_resolution

max.dmr.size

Get_Novel_DMRs arg QueryLimit

min.dmr.cpgs

Get_Novel_DMRs arg minCpGs

min.absZscore

Get_Novel_DMRs arg minZ

null

null distribution

Value

Returns a list with two indicies, representing intermediate DMR calls within the Get_Novel_DMRs() function and a list of background regions..