plotMC {PBSadmb}

Plot Results of MCMC Simulation

Description

Plot results of an ADMB MCMC simulation using various plot methods.

Usage

plotMC(prefix, act="pairs", pthin=1, useCols=NULL)

Arguments

prefix

string name prefix of the ADMB project (e.g., "vonb").

act

string scalar: action describing plot type (current choices: "pairs", "eggs", "acf", "trace", and "dens").

pthin

numeric scalar indicating interval at which to collect records from the .mc.dat file for plotting.

useCols

logical vector indicating which columns of .mc.dat to plot.

Note

A wrapper function that can be called from a GUI exists as .win.plotMC. Use the PBSadmb GUI to explore these plots easily.

Author(s)

Rowan Haigh, Program Head – Offshore Rockfish
Pacific Biological Station (PBS), Fisheries & Oceans Canada (DFO), Nanaimo BC
locus opus: Offsite, Vancouver BC
Last modified Rd: 2009-09-10

See Also

runMC, showADargs