samplePass {PAC}

Run PAC for Specified Samples

Description

A wrapper to run PAC and output subpopulation mutual information networks. Please use the PAC function itself for individual samples or if the MAN step is not needed.

Usage

samplePass(sampleIDs, dim_subset, hyperrectangles, num_PACSupop, max.iter,
  num_networkEdge)

Arguments

sampleIDs

sampleID vector

dim_subset

a string vector of string names to subset the data columns for PAC; set to NULL to use all columns

hyperrectangles

number of hyperrectangles to learn for each sample

num_PACSupop

number of subpopulations to output for each sample using PAC

max.iter

postprocessing kmeans iterations

num_networkEdge

a threshold on the number of edges to output for each subpopulation mutual information network