renamePrunedSubpopulations {PAC}

Prune away specified subpopulations in clades that are far away.

Description

Prune away specified subpopulations in clades that are far away.

Usage

renamePrunedSubpopulations(pacman_results, subpopulationsToPrune)

Arguments

pacman_results

PAC-MAN analysis result matrix that contains network annotation, clade IDs and mean (centroid) clade expression levels.

subpopulationsToPrune

A vector of clade IDs; these clades will be pruned.

Value

Returns PAC-MAN analysis result matrix with pruned clades. The pruning process creates new clades to replace the original clade ID of the specified subpopulations.