outputRepresentativeNetworks_topEdges {PAC}

Outputs the representative/clade networks (plots and summary vectors) for subpopulations with size larger than a desired threshold. Saves the networks and the data matrices without the smaller subpopulations.

Description

Outputs the representative/clade networks (plots and summary vectors) for subpopulations with size larger than a desired threshold. Saves the networks and the data matrices without the smaller subpopulations.

Usage

outputRepresentativeNetworks_topEdges(dataMatrix, subpopulationLabels,
  threshold)

Arguments

dataMatrix

data matrix with first column being the sample ID

subpopulationLabels

the subpopulation labels

threshold

the number of edges to draw for each subpopulation mutual information network