getRepresentativeNetworks {PAC}

Representative Networks

Description

Outputs representative networks for clades/subpopulations larger than a size filter (very small subpopulations are not considered in downstream analyses)

Usage

getRepresentativeNetworks(sampleIDs, dim_subset, SubpopSizeFilter,
  num_networkEdge)

Arguments

sampleIDs

sampleID vector

dim_subset

a string vector of string names to subset the data columns for PAC; set to NULL to use all columns

SubpopSizeFilter

the cutoff for small subpopulations. Smaller subpopulations have unstable covariance structure, so no network structure is calculated

num_networkEdge

the number of edges to draw for each subpopulation mutual information network