pred_hmc {OpEnHiMR}

Prediction of Histone Modification for Multiclass Data

Description

Prediction of H3K27me3, H3K9ac and H3K4me3 modification in rice.

Usage

pred_hmc(fasta_file_path)

Arguments

fasta_file_path

Sequence file path (.fasta format)

Value

Modications: sequences with their modifications (H3K27me3, H3K9ac and H3K4me3) or no modification.

References

Yin, Q., Wu, M., Liu, Q. et al. DeepHistone: a deep learning approach to predicting histone modifications. BMC Genomics 20 (Suppl 2), 193 (2019).

Examples

example_path <- system.file("exdata/test.fasta", package = "OpEnHiMR")
pred <- pred_hmc(fasta_file_path = example_path)