lane {OmicNavigator}R Documentation

lane from Bioconductor workflow RNAseq123

Description

A subset of the object lane from Bioconductor workflow RNAseq123.

Usage

lane

Format

A factor with 3 levels:

L004

Sample sequenced on lane 4

L006

Sample sequenced on lane 6

L008

Sample sequenced on lane 8

Source

https://bioconductor.org/packages/release/workflows/vignettes/RNAseq123/inst/doc/limmaWorkflow.html

References

Law CW, Alhamdoosh M, Su S, Dong X, Tian L, Smyth GK, Ritchie ME. RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR [version 3; peer review: 3 approved]. F1000Research 2018, 5:1408 doi:10.12688/f1000research.9005.3

Sheridan, J.M., Ritchie, M.E., Best, S.A. et al. A pooled shRNA screen for regulators of primary mammary stem and progenitor cells identifies roles for Asap1 and Prox1. BMC Cancer 2015, 15:221 doi:10.1186/s12885-015-1187-z

Examples

  table(lane)
  str(lane)


[Package OmicNavigator version 1.13.13 Index]