getEnrichmentsTable {OmicNavigator}

Get enrichments table from a study

Description

Get enrichments table from a study

Usage

getEnrichmentsTable(
  study,
  modelID,
  annotationID,
  type = "nominal",
  libraries = NULL
)

Arguments

study

An OmicNavigator study. Either an object of class onStudy, or the name of an installed study package.

modelID

Filter by modelID

annotationID

Filter by annotationID

type

Type of p-value: ("nominal" or "adjusted")

libraries

The directories to search for installed study packages. If left as NULL (the default), then installed.packages will use the result of .libPaths.

Value

A data frame of enrichments with the following columns:

termID

The unique ID for the annotation term

description

The description of the annotation term

...

One column for each of the enrichments