getEnrichmentsIntersection {OmicNavigator}

getEnrichmentsIntersection

Description

getEnrichmentsIntersection

Usage

getEnrichmentsIntersection(
  study,
  modelID,
  annotationID,
  mustTests,
  notTests,
  sigValue,
  operator,
  type
)

Arguments

study

An OmicNavigator study. Either an object of class onStudy, or the name of an installed study package.

modelID

Filter by modelID

annotationID

Filter by annotationID

mustTests

The testIDs for which a featureID (or termID for enrichment) must pass the filters

notTests

The testIDs for which a featureID (or termID for enrichment) must not pass the filters. In other words, if a featureID passes the filter for a testID specified in notTests, that featureID is removed from the output

sigValue

The numeric significance value to use as a cutoff for each column

operator

The comparison operators for each column, e.g. "<"

type

Type of p-value: ("nominal" or "adjusted")

Value

Returns a data frame with the enrichments, similar to getEnrichmentsTable. Only rows that pass all the filters are included.

See Also

getEnrichmentsTable