getBarcodeData {OmicNavigator}

Get data for barcode and violin plots

Description

Get data for barcode and violin plots

Usage

getBarcodeData(study, modelID, testID, annotationID, termID)

Arguments

study

An OmicNavigator study. Either an object of class onStudy, or the name of an installed study package.

modelID

Filter by modelID

testID

Filter by testID

annotationID

Filter by annotationID

termID

Filter by termID

Value

A list with the following components:

data

Data frame with the differential statistics to plot

highest

(numeric) The largest differential statistic, rounded up to the next integer

labelStat

(character) The x-axis label to describe the differential statistic

labelLow

(character) The vertical axis label on the left to describe smaller values (default is "Low")

labelHigh

(character) The vertical axis label on the right to describe larger values (default is "High")

See Also

addBarcodes, getBarcodes