cam.BasalvsML {OmicNavigator}

cam.BasalvsML from Bioconductor workflow RNAseq123

Description

A subset of the object cam.BasalvsML from Bioconductor workflow RNAseq123.

Usage

cam.BasalvsML

Format

A data frame with 4 rows and 4 columns:

NGenes

Number of genes in each term

Direction

Direction of the enrichment

PValue

Nominal p-value

FDR

Multiple-testing adjusted p-value

Source

https://bioconductor.org/packages/release/workflows/vignettes/RNAseq123/inst/doc/limmaWorkflow.html

References

Law CW, Alhamdoosh M, Su S, Dong X, Tian L, Smyth GK, Ritchie ME. RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR [version 3; peer review: 3 approved]. F1000Research 2018, 5:1408 doi:10.12688/f1000research.9005.3

Sheridan, J.M., Ritchie, M.E., Best, S.A. et al. A pooled shRNA screen for regulators of primary mammary stem and progenitor cells identifies roles for Asap1 and Prox1. BMC Cancer 2015, 15:221 doi:10.1186/s12885-015-1187-z

Examples

  head(cam.BasalvsML)
  str(cam.BasalvsML)