| basal.vs.ml {OmicNavigator} | R Documentation |
basal.vs.ml from Bioconductor workflow RNAseq123
Description
A subset of the object basal.vs.ml from Bioconductor workflow RNAseq123.
Usage
basal.vs.ml
Format
A data frame with 24 rows and 8 columns:
- ENTREZID
Entrez ID of mouse gene
- SYMBOL
Symbol of mouse gene
- TXCHROM
Chromosome location of mouse gene
- logFC
Log fold change
- AveExpr
Average expression level of the gene across all samples
- t
Moderated t-statistic
- P.Value
p-value
- adj.P.Val
Adjusted p-value
Source
https://bioconductor.org/packages/release/workflows/vignettes/RNAseq123/inst/doc/limmaWorkflow.html
References
Law CW, Alhamdoosh M, Su S, Dong X, Tian L, Smyth GK, Ritchie ME. RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR [version 3; peer review: 3 approved]. F1000Research 2018, 5:1408 doi:10.12688/f1000research.9005.3
Sheridan, J.M., Ritchie, M.E., Best, S.A. et al. A pooled shRNA screen for regulators of primary mammary stem and progenitor cells identifies roles for Asap1 and Prox1. BMC Cancer 2015, 15:221 doi:10.1186/s12885-015-1187-z
Examples
head(basal.vs.ml)
str(basal.vs.ml)