addEnrichments {OmicNavigator}

Add enrichment results

Description

Add enrichment results

Usage

addEnrichments(study, enrichments, reset = FALSE)

Arguments

study

An OmicNavigator study created with createStudy

enrichments

The enrichment results from each model. The input is a nested named list. The names of the list correspond to the model names. Each list element should be a list of the annotation databases tested (addAnnotations). The names of the list correspond to the annotation databases. Each list element should be another list of tests (addTests). The names correspond to the tests performed. Each of these elements should be a data frame with enrichment results. Each table must contain the following columns: "termID", "description", "nominal" (the nominal statistics), and "adjusted" (the statistics after adjusting for multiple testing). Any additional columns are ignored.

reset

Reset the data prior to adding the new data (default: FALSE). The default is to add to or modify any previously added data (if it exists). Setting reset = TRUE enables you to remove existing data you no longer want to include in the study.

Value

Returns the original onStudy object passed to the argument study, but modified to include the newly added data