add_pvals_plot {OVtool}R Documentation

add_pvals_plot

Description

Plot of effect size contours with pvalue overlay

Usage

add_pvals_plot(prep, col = "color")

Arguments

prep

Input from prep_for_plots

col

If user wants color or black and white. Specify color with "color" or black and white "bw"

Value

a list of class gg and ggplot

Examples

data(sud)
sud = data.frame(sud[sample(1:nrow(sud),100),])
sud$treat = ifelse(sud$treat == "A", 1, 0)
sud$wts = sample(seq(1, 10, by=.01), size=nrow(sud), replace = TRUE)
outcome_mod = outcome_model(data = sud,
                            weights = "wts",
                            treatment = "treat",
                            outcome = "eps7p_6",
                            model_covariates = c("sfs8p_0", "eps7p_0",
                                                 "ada_0"),
                            estimand = "ATE")

ovtool_results = ov_sim(model_results=outcome_mod,
                        plot_covariates=c("sfs8p_0", "ada_0"),
                        es_grid = 0,
                        rho_grid = 0,
                        n_reps = 2,
                        progress=FALSE)
prep = prep_for_plots(ovtool_results, p_contours=.05)
plot = add_pvals_plot(prep = prep)

[Package OVtool version 1.0.3 Index]