| summary.Nonpareil.Curve {Nonpareil} | R Documentation |
Returns a summary of the Nonpareil.Curve results.
Description
Returns a summary of the Nonpareil.Curve results.
Usage
## S3 method for class 'Nonpareil.Curve'
summary(object, ...)
Arguments
object |
|
... |
Additional parameters ignored. |
Value
Returns a matrix with the following values for the dataset:
kappa: "Redundancy" value of the entire dataset.
C: Average coverage of the entire dataset.
LRstar: Estimated sequencing effort required to reach the objective average coverage (star, 95
LR: Actual sequencing effort of the dataset.
modelR: Pearson's R coefficient betweeen the rarefied data and the projected model.
diversity: Nonpareil sequence-diversity index (Nd). This value's units are the natural logarithm of the units of sequencing effort (log-bp), and indicates the inflection point of the fitted model for the Nonpareil curve. If the fit doesn't converge, or the model is not estimated, the value is zero (0).