Nonpareil {Nonpareil}

Nonpareil: Metagenome Coverage Estimation and Projections for 'Nonpareil'.

Description

Plot, process, and analyze NPO files produced by 'Nonpareil' http://enve-omics.ce.gatech.edu/nonpareil/.

Citation

If you use Nonpareil, please cite: Rodriguez-R et al. 2018. Nonpareil 3: Fast estimation of metagenomic coverage and sequence diversity. mSystems 3(3): e00039-18. DOI: 10.1128/mSystems.00039-18.

Rodriguez-R & Konstantinidis. 2014. Nonpareil: a redundancy-based approach to assess the level of coverage in metagenomic datasets. Bioinformatics 30 (5): 629-635. DOI: 10.1093/bioinformatics/btt584.

For an extended discussion on coverage in metagenomic data, see also:

Rodriguez-R & Konstantinidis. 2014. Estimating coverage in metagenomic data sets and why it matters. The ISME Journal 8: 2349–2351. DOI: 10.1038/ismej.2014.76.

Author(s)

Maintainer: Luis M. Rodriguez-R [e-mail]

See Also

Useful links:

• http://enve-omics.ce.gatech.edu/nonpareil/