rc.plot.ideogram {NetWeaver}

Plot Ideogram

Description

Add chromosome ideogram on circos plot.

Usage

rc.plot.ideogram(track.ids, plot.band=TRUE, plot.chromosome.id=TRUE, 
	chrom.alias=NULL, color.chromosome.id=NULL, cex.text=1, track.border=NULL,
	polygon.border=NULL, las=0, custom.track.height=NULL)

Arguments

track.ids

vector, two integers specifying the two tacks for plotting chromosome name and cyto band respectively.

plot.band

logic, whether to plot ideogram cyto band.

plot.chromosome.id

logic, whether to plot chromosome id.

chrom.alias

NULL or a chromosome named vector of alias.

color.chromosome.id

NULL or a chromosome named vector of colors.

cex.text

numeric, scale of text.

track.border

the color to draw the track border. Use NA to omit borders.

polygon.border

the color to draw the polygon border. See explanation for polygon.

las

numeric in 0,1,2,3; the style of chromosome labels. 0, always parallel to the track [default]; 1, always horizontal; 2, always perpendicular to the track; 3, always vertical.

custom.track.height

NULL or numeric, specifying customized track height when plotting cyto band.

Author(s)

Minghui Wang <[e-mail]>

Examples

#This is not to be run alone. Please see tutorial vignette("netweaver") for usage.