rc.plot.ideogram {NetWeaver} | R Documentation |
Plot Ideogram
Description
Add chromosome ideogram on circos plot.
Usage
rc.plot.ideogram(track.ids, plot.band=TRUE, plot.chromosome.id=TRUE,
chrom.alias=NULL, color.chromosome.id=NULL, cex.text=1, track.border=NULL,
polygon.border=NULL, las=0, custom.track.height=NULL)
Arguments
track.ids |
vector, two integers specifying the two tacks for plotting chromosome name and cyto band respectively. |
plot.band |
logic, whether to plot ideogram cyto band. |
plot.chromosome.id |
logic, whether to plot chromosome id. |
chrom.alias |
NULL or a chromosome named vector of alias. |
color.chromosome.id |
NULL or a chromosome named vector of colors. |
cex.text |
numeric, scale of text. |
track.border |
the color to draw the track border. Use NA to omit borders. |
polygon.border |
the color to draw the polygon border. See explanation for |
las |
numeric in 0,1,2,3; the style of chromosome labels. 0, always parallel to the track [default]; 1, always horizontal; 2, always perpendicular to the track; 3, always vertical. |
custom.track.height |
NULL or numeric, specifying customized track height when plotting cyto band. |
Author(s)
Minghui Wang <m.h.wang@live.com>
Examples
#This is not to be run alone. Please see tutorial vignette("netweaver") for usage.
[Package NetWeaver version 0.0.6 Index]