s_ng {NGBVS} | R Documentation |
Standard NG prior
Description
Standard Normal Gammp prior calculates the posterior distribution for the fine mapping study. The number of individuals must be greater than the number of SNPs.
Usage
s_ng(y, data, medstar = 1, numb = 100, burnin = 1, every = 1)
Arguments
y |
A vector of the pheontype. |
data |
An |
medstar |
The value of M. |
numb |
Number of samples for each SNP. |
burnin |
The amount of burn-in for the MCMC sample. |
every |
The amount of thining for the MCMC sample. |
Value
A list including:
alpha |
A vector of the posterior distribution of the intercept. |
beta |
A matrix of the posterior distribution of the effect sizes. |
sigmasq |
A vector of the posterior distribution of |
psi |
A matrix of the posterior distribution of |
lambda |
A vector of the posterior distribution of |
gammasq |
A vector of the posterior distribution of |
Author(s)
Abulaziz Alenazi.
R implementation and documentation: Abulaziz Alenazi a.alenazi@nbu.edu.sa.
Examples
set.seed(1)
data <- matrix( rnorm(500 * 30), ncol = 30)
s_ng(y = rnorm(500), data = data)