check_outliers {NACHO}

Annotate a "nacho" object for outliers

Description

Add or update "is_outlier" column in the "nacho" field of an object from a call to load_rcc() or normalise() (nacho_object$nacho), using the current quality-control thresholds.

Usage

check_outliers(nacho_object)

Arguments

nacho_object

[list] A list object of class "nacho" obtained from load_rcc() or normalise().

Value

A [list] object of class "nacho".

Examples

data(GSE74821)
nacho_object <- check_outliers(GSE74821)
head(nacho_object$nacho)