Mondrian-package {Mondrian}

A Simple Graphical Representation of the Relative Occurrence and Co-Occurrence of Events

Description

The unique function of this package allows representing in a single graph the relative occurrence and co-occurrence of events measured in a sample.
As examples, the package was applied to describe the occurrence and co-occurrence of different species of bacterial or viral symbionts infecting arthropods at the individual level. The graphics allows determining the prevalence of each symbiont and the patterns of multiple infections (i.e. how different symbionts share or not the same individual hosts).
We named the package after the famous painter as the graphical output recalls Mondrian’s paintings.

A shiny application MondrianShiny is available to use the functionalities of the Mondrian package in an interactive way. In this application, two examples are shown. The user can also upload its own data and compute the mondrian function on it. The display output can then be saved. MondrianShiny can be run on a R session, doing shiny::runApp(system.file("MondrianShiny", package = "Mondrian")) or online at https://lbbe-shiny.univ-lyon1.fr/Mondrian/inst/MondrianShiny/.

Author(s)

Aurélie Siberchicot <[e-mail]>, Delphine Charif, Gabriel Terraz and Fabrice Vavre

See Also

mondrian

Examples

# About using the MondrianShiny app
# 

if(interactive()) {
  shiny::runApp(system.file("MondrianShiny", package = "Mondrian"))
}