| calc_area {MixSIAR} | R Documentation |
Calculate the normalized surface area of the source convex hull
Description
calc_area() calculates the normalized surface area of the SOURCE + TDF
convex hull, only if there are exactly 2 biotracers.
Usage
calc_area(source, mix, discr)
Arguments
source |
output from |
mix |
output from |
discr |
output from |
Details
Important detail is that, unlike in Brett (2014), calc_area uses the
combined SOURCE + TDF variance to normalize the surface area:
\sqrt{\sigma^2_source + \sigma^2_discr}
This is the variance used in fitting the mixing model.
calc_area() relies on the splancs::areapl() function from the splancs
package. If splancs is not installed, a WARNING message will appear.
Value
If source$by_factor = FALSE, calc_area returns a scalar, the
normalized surface area of the SOURCE + TDF convex hull
If source$by_factor = TRUE, calc_area returns a vector, where
the entries are the normalized surface areas of the convex hull of each
source factor level (e.g. source data by 3 Regions, returns a 3-vector of
the areas of the Region 1 convex hull, Region 2 convex hull, etc.)