verify_pq {MiscMetabar} | R Documentation |
Verify the validity of a phyloseq object
Description
Mostly for internal use in MiscMetabar functions.
Usage
verify_pq(
physeq,
verbose = FALSE,
min_nb_seq_sample = 500,
min_nb_seq_taxa = 1
)
Arguments
physeq |
(required): a |
verbose |
(logical, default FALSE) If TRUE, prompt some warnings. |
min_nb_seq_sample |
(numeric) Only used if verbose = TRUE. Minimum number of sequences per samples to not show warning. |
min_nb_seq_taxa |
(numeric) Only used if verbose = TRUE. Minimum number of sequences per taxa to not show warning. |
Value
Nothing if the phyloseq object is valid. An error in the other case. Warnings if verbose = TRUE
[Package MiscMetabar version 0.9.1 Index]