summary_plot_pq {MiscMetabar}

Summarize a phyloseq-class object using a plot.

Description

Usage

summary_plot_pq(
  physeq,
  add_info = TRUE,
  min_seq_samples = 500,
  clean_pq = TRUE
)

Arguments

physeq

(required): a phyloseq-class object obtained using the phyloseq package.

add_info

Does the bottom down corner contain extra informations?

min_seq_samples

(int): Used only when add_info is set to true to print the number of samples with less sequences than this number.

clean_pq

(logical): Does the phyloseq object is cleaned using the clean_pq() function?

Value

A ggplot2 object

Examples

summary_plot_pq(data_fungi)
summary_plot_pq(data_fungi, add_info = FALSE) + scale_fill_viridis_d()