is_cutadapt_installed {MiscMetabar}

Test if cutadapt is installed.

Description

Useful for testthat and examples compilation for R CMD CHECK and test coverage

Usage

is_cutadapt_installed(
  args_before_cutadapt =
    "source ~/miniconda3/etc/profile.d/conda.sh && conda activate cutadaptenv && "
)

Arguments

args_before_cutadapt

: (String) A one line bash command to run before to run cutadapt. For examples, "source ~/miniconda3/etc/profile.d/conda.sh && conda activate cutadaptenv &&" allow to bypass the conda init which asks to restart the shell

Value

A logical that say if cutadapt is install in

Author(s)

Adrien Taudière

Examples

MiscMetabar::is_cutadapt_installed()