are_modality_even_depth {MiscMetabar} | R Documentation |
Test if the mean number of sequences by samples is link to the modality of a factor
Description
The aim of this function is to provide a warnings if samples depth significantly
vary among the modalities of a factor present in the sam_data
slot.
This function apply a Kruskal-Wallis rank sum test to the number of sequences
per samples in function of the factor fact
.
Usage
are_modality_even_depth(physeq, fact, boxplot = FALSE)
Arguments
physeq |
(required): a |
fact |
(required): Name of the factor to cluster samples by modalities.
Need to be in |
boxplot |
(logical) Do you want to plot boxplot? |
Value
The result of a Kruskal-Wallis rank sum test
Author(s)
Adrien Taudière
Examples
are_modality_even_depth(data_fungi_mini, "Time")$p.value
are_modality_even_depth(rarefy_even_depth(data_fungi_mini), "Time")$p.value
are_modality_even_depth(data_fungi_mini, "Height", boxplot = TRUE)
[Package MiscMetabar version 0.9.1 Index]