add_funguild_info {MiscMetabar} | R Documentation |
Add information about Guild for FUNGI the FUNGuild databse
Description
Please cite Nguyen et al. 2016 (doi:10.1016/j.funeco.2015.06.006)
Usage
add_funguild_info(
physeq,
taxLevels = c("Kingdom", "Phylum", "Class", "Order", "Family", "Genus", "Species")
)
Arguments
physeq |
(required): a |
taxLevels |
Name of the 7 columns in tax_table required by funguild |
Details
This function is mainly a wrapper of the work of others.
Please make a reference to FUNGuildR
package and the associate
publication if you
use this function.
Value
A new object of class physeq
with Guild information added to
tax_table
slot
Author(s)
Adrien Taudière
See Also
Examples
if (requireNamespace("httr")) {
d_fung_mini <- add_funguild_info(data_fungi_mini,
taxLevels = c(
"Domain",
"Phylum",
"Class",
"Order",
"Family",
"Genus",
"Species"
)
)
sort(table(d_fung_mini@tax_table[, "guild"]), decreasing = TRUE)
}
[Package MiscMetabar version 0.9.1 Index]