add_blast_info {MiscMetabar}

Add information from blast_pq() to the tax_table slot of a phyloseq object

Description

Basically a wrapper of blast_pq() with option unique_per_seq = TRUE and score_filter = FALSE.

Add the information to the taxtable

Usage

add_blast_info(physeq, fasta_for_db, silent = FALSE, ...)

Arguments

physeq

(required): a phyloseq-class object obtained using the phyloseq package.

fasta_for_db

path to a fasta file to make the blast database

silent

(logical) If true, no message are printing.

...

Other arguments passed on to blast_pq() function.

Value

A new phyloseq-class object with more information in tax_table based on a blast on a given database

Author(s)

Adrien Taudière