SRS_curve_pq {MiscMetabar} | R Documentation |
Scaling with ranked subsampling (SRS) curve of phyloseq object
Description
Usage
SRS_curve_pq(physeq, clean_pq = FALSE, ...)
Arguments
physeq |
(required): a |
clean_pq |
(logical): Does the phyloseq
object is cleaned using the |
... |
Other arguments passed on to |
Value
A plot
Examples
if (requireNamespace("SRS")) {
SRS_curve_pq(data_fungi_mini,
max.sample.size = 200,
rarefy.comparison = TRUE, rarefy.repeats = 3
)
SRS_curve_pq(data_fungi_mini, max.sample.size = 500, metric = "shannon")
}
[Package MiscMetabar version 0.9.1 Index]