LCBD_pq {MiscMetabar} | R Documentation |
Compute and test local contributions to beta diversity (LCBD) of samples
Description
A wrapper for the adespatial::beta.div()
function in the case of physeq
object.
Usage
LCBD_pq(physeq, p_adjust_method = "BH", ...)
Arguments
physeq |
(required): a |
p_adjust_method |
(chr, default "BH"): the method used to adjust p-value |
... |
Others arguments passed on to |
Value
An object of class beta.div
see adespatial::beta.div()
function
for more information
Author(s)
Adrien Taudière
This function is mainly a wrapper of the work of others.
Please make a reference to adespatial::beta.div()
if you
use this function.
See Also
plot_LCBD_pq, adespatial::beta.div()
Examples
if (requireNamespace("adespatial")) {
res <- LCBD_pq(data_fungi_sp_known, nperm = 5)
str(res)
length(res$LCBD)
length(res$SCBD)
}
if (requireNamespace("adespatial")) {
LCBD_pq(data_fungi_sp_known, nperm = 5, method = "jaccard")
}
[Package MiscMetabar version 0.9.1 Index]