setup_humans_MOI {MicroMoB} | R Documentation |
Setup humans with MOI (multiplicity of infection) pathogen model
Description
This is a queueing model (M/M/inf) of superinfection in humans.
Usage
setup_humans_MOI(
model,
stochastic,
theta,
wf = NULL,
H,
MOI,
b = 0.55,
c = 0.15,
r = 1/200,
sigma = 1
)
Arguments
model |
an object from make_MicroMoB |
stochastic |
should the model update deterministically or stochastically? |
theta |
a time spent matrix |
wf |
biting weights |
H |
vector of strata population sizes |
MOI |
a matrix giving the distribution of persons across strata (columns) and multiplicity of infection (rows). |
b |
transmission efficiency (mosquito to human) |
c |
transmission efficiency (human to mosquito) |
r |
recovery rate (inverse of infectious duration) |
sigma |
control non-independence of pathogen clearance; |
Value
no return value
Note
The step_humans method for the MOI model will grow the MOI
matrix (add rows) if an individual's MOI exceeds the size of the matrix; therefore
it's a good idea to pad the input matrix with extra empty rows to avoid
reallocating memory during the simulation as much as possible.