get_config_humans_SIR {MicroMoB}

Get parameters for SIR human model

Description

The JSON config file should have 8 entries:

• stochastic: a boolean value

• theta: matrix (row major)

• wf: vector

• H: vector

• SIR: matrix (row major)

• b: scalar

• c: scalar

• gamma: scalar

For interpretation of the entries, please read setup_humans_SIR.

Usage

get_config_humans_SIR(path)

Arguments

path

a file path to a JSON file

Value

a named list

Examples

# to see an example of proper JSON input, run the following
library(jsonlite)
n <- 6 # number of human population strata
p <- 5 # number of patches
theta <- matrix(rexp(n*p), nrow = n, ncol = p)
theta <- theta / rowSums(theta)
H <- rep(10, n)
SIR <- matrix(0, nrow = n, ncol = 3)
SIR[, 1] <- H
par <- list(
 "stochastic" = FALSE,
 "theta" = theta,
 "wf" = rep(1, n),
 "H" = H,
 "SIR" = SIR,
 "b" = 0.55,
 "c" = 0.15,
 "gamma" = 1/7
)
toJSON(par, pretty = TRUE)