get_config_humans_MOI {MicroMoB} | R Documentation |
Get parameters for MOI human model
Description
The JSON config file should have 9 entries:
stochastic: a boolean value
theta: matrix (row major)
wf: vector
H: vector
MOI: matrix (row major)
b: scalar
c: scalar
r: scalar
sigma: scalar
For interpretation of the entries, please read setup_humans_MOI.
Usage
get_config_humans_MOI(path)
Arguments
path |
a file path to a JSON file |
Value
a named list
Examples
# to see an example of proper JSON input, run the following
library(jsonlite)
n <- 6 # number of human population strata
p <- 5 # number of patches
theta <- matrix(rexp(n*p), nrow = n, ncol = p)
theta <- theta / rowSums(theta)
H <- rep(10, n)
MOI <- matrix(0, nrow = 10, ncol = n)
MOI[1, ] <- H
par <- list(
"stochastic" = FALSE,
"theta" = theta,
"wf" = rep(1, n),
"H" = H,
"MOI" = MOI,
"b" = 0.55,
"c" = 0.15,
"r" = 1/200,
"sigma" = 1
)
toJSON(par, pretty = TRUE)
[Package MicroMoB version 0.1.2 Index]