miRNA_loadDiagnosticThreshold {MiRNAQCD}

Load diagnostic threshold values.

Description

This function loads from file a data frame containing the diagnostic threshold values of a trained classifier.

Usage

miRNA_loadDiagnosticThreshold(inputFileName, sep = "")

Arguments

inputFileName

Name of the file to be loaded. The file has to contain at least the columns 'Threshold', 'DeltaThreshold', 'ChiUp', 'DChiUp', 'ChiDown', 'DChiDown' (not necessarily in this order).

sep

Field separator character; the default is any white space (one or more spaces or tabulations).

Value

A data frame containing all the columns present in the file.

Please refer to the user manual installed in "/path-to-library/MiRNAQCD/doc/manual.pdf" for detailed function documentation. The path "/path-to-library" can be shown from R by calling ".libPaths()"

Examples

requiredFile = paste(system.file(package="MiRNAQCD"),
	"/extdata/test_dataset_alpha_threshold.txt", sep='')
threshold <- miRNA_loadDiagnosticThreshold(requiredFile)