cycVignettesAMP {MetaCycle}

cycVignettesAMP

Description

This data set lists meta2d's analysis results of three circadian transcripts selected from the same source dataset used by cycMouseLiverRNA.

Usage

cycVignettesAMP

Format

A dataframe containing 71 columns described as below:

[,1]	CycID	character	transcript name
[,2]	ARS_pvalue	numeric	pvalue from ARS
[,3]	ARS_BH.Q	numeric	FDR from ARS
[,4]	ARS_period	numeric	period from ARS
[,5]	ARS_adjphase	numeric	adjusted phase from ARS
[,6]	ARS_amplitude	numeric	amplitude from ARS
[,7]	JTK_pvalue	numeric	pvalue from JTK
[,8]	JTK_BH.Q	numeric	FDR from JTK
[,9]	JTK_period	numeric	period from JTK
[,10]	JTK_adjphase	numeric	adjusted phase from JTK
[,11]	JTK_amplitude	numeric	amplitude from JTK
[,12]	LS_pvalue	numeric	pvalue from LS
[,13]	LS_BH.Q	numeric	FDR from JTK
[,14]	LS_period	numeric	period from LS
[,15]	LS_adjphase	numeric	adjusted phase from LS
[,16]	LS_amplitude	numeric	amplitude from LS
[,17]	meta2d_pvalue	numeric	integrated pvalue
[,18]	meta2d_BH.Q	numeric	FDR based on integrated pvalue
[,19]	meta2d_period	numeric	averaged period of three methods
[,20]	meta2d_phase	numeric	integrated phase
[,21]	meta2d_Base	numeric	baseline value given by meta2d
[,22]	meta2d_AMP	numeric	amplitude given by meta2d
[,23]	meta2d_rAMP	numeric	relative amplitude
[,24:71]	CT18 to CT65	numeric	sampling time point

Source

Hughes M. E., et al. (2009). Harmonics of circadian gene transcription in mammals. PLoS Genet, 5(4), e1000442.