select_nb_cluster {MagmaClustR}

Select the optimal number of clusters

Description

In MagmaClust, as for any clustering method, the number K of clusters has to be provided as an hypothesis of the model. This function implements a model selection procedure, by maximising a variational BIC criterion, computed for different values of K. A heuristic for a fast approximation of the procedure is proposed as well, although the corresponding models would not be properly trained.

Usage

select_nb_cluster(
  data,
  fast_approx = TRUE,
  grid_nb_cluster = 1:10,
  ini_hp_k = NULL,
  ini_hp_i = NULL,
  kern_k = "SE",
  kern_i = "SE",
  plot = TRUE,
  ...
)

Arguments

data

A tibble or data frame. Columns required: ID, Input , Output. Additional columns for covariates can be specified. The ID column contains the unique names/codes used to identify each individual/task (or batch of data). The Input column should define the variable that is used as reference for the observations (e.g. time for longitudinal data). The Output column specifies the observed values (the response variable). The data frame can also provide as many covariates as desired, with no constraints on the column names. These covariates are additional inputs (explanatory variables) of the models that are also observed at each reference Input.

fast_approx

A boolean, indicating whether a fast approximation should be used for selecting the number of clusters. If TRUE, each Magma or MagmaClust model will perform only one E-step of the training, using the same fixed values for the hyper-parameters (ini_hp_k and ini_hp_i, or random values if not provided) in all models. The resulting models should not be considered as trained, but this approach provides an convenient heuristic to avoid a cumbersome model selection procedure.

grid_nb_cluster

A vector of integer, corresponding to grid of values that will be tested for the number of clusters.

ini_hp_k

A tibble or data frame of hyper-parameters associated with kern_k. The hp function can be used to draw custom hyper-parameters with the correct format.

ini_hp_i

A tibble or data frame of hyper-parameters associated with kern_i. The hp function can be used to draw custom hyper-parameters with the correct format.db

kern_k

A kernel function associated to the mean processes.

kern_i

A kernel function associated to the individuals/tasks.

plot

A boolean indicating whether the plot of V-BIC values for all numbers of clusters should displayed.

...

Any additional argument that could be passed to train_magmaclust.

Value

A list, containing the results of model selection procedure for selecting the optimal number of clusters thanks to a V-BIC criterion maximisation. The elements of the list are:

• best_k: An integer, indicating the resulting optimal number of clusters

• seq_vbic: A vector, corresponding to the sequence of the V-BIC values associated with the models trained for each provided cluster's number in grid_nb_cluster.

• trained_models: A list, named by associated number of clusters, of Magma or MagmaClust models that have been trained (or approximated if fast_approx = T) during the model selection procedure.

Examples

TRUE