| iSCAM {MSEtool} | R Documentation |
Reads iSCAM files into a hierarchical R list object
Description
Internal functions for reading iSCAM input and output files into R
Usage
load.iscam.files(model.dir, burnin = 1000, thin = 1, verbose = FALSE)
fetch.file.names(path, filename)
read.report.file(fn)
read.data.file(file = NULL, verbose = FALSE)
read.control.file(
file = NULL,
num.gears = NULL,
num.age.gears = NULL,
verbose = FALSE
)
read.projection.file(file = NULL, verbose = FALSE)
read.par.file(file = NULL, verbose = FALSE)
read.mcmc(model.dir = NULL, verbose = TRUE)
Arguments
model.dir |
Folder name |
burnin |
The initial mcmc samples to be discarded |
thin |
The degree of chain thinning 1 in every thin iterations is kept |
verbose |
should detailed results be printed to console |
path |
File path |
filename |
The filename |
fn |
File location |
file |
File location |
num.gears |
The number of gears |
num.age.gears |
The number age-gears |
Functions
-
load.iscam.files(): Wrapper function to generate R list -
fetch.file.names(): A function for returning the three types of iSCAM input and output files -
read.report.file(): A function for returning the results of the .rep iscam file -
read.data.file(): A function for returning the results of the .dat iscam file -
read.control.file(): A function for returning the results of the iscam control file -
read.projection.file(): A function for returning the results of the iscam projection file -
read.par.file(): A function for returning the results of the iscam .par file -
read.mcmc(): A function for returning the results of the iscam mcmc files
Author(s)
Chris Grandin (DFO PBS)