Pplot2 {MSEtool}

A projection by projection plot of F/FMSY, B/BMSY, B/B0, and yield

Description

A projection by projection plot of F/FMSY, B/BMSY, B/B0, and yield

Usage

Pplot2(
  MSEobj,
  YVar = c("F_FMSY", "SSB_SSBMSY"),
  MPs = NA,
  sims = NULL,
  traj = c("all", "quant", "both"),
  quants = c(0.1, 0.9),
  incquant = TRUE,
  quantcol = "lightgray",
  RefYield = c("lto", "curr"),
  LastYr = TRUE,
  ref.lines = c(0.5, 1, 1.5),
  maxMP = 6,
  alpha = 60,
  cex.axis = 1,
  cex.lab = 1,
  YLab = NULL,
  incMP = TRUE,
  MPcex = 1,
  MPcol = "black",
  incLeg = TRUE,
  cex.leg = 1.5,
  legPos = "topleft",
  yline = NULL,
  xline = NULL,
  parOR = FALSE,
  xaxis = TRUE,
  yaxis = TRUE,
  oneIt = TRUE,
  ...
)

Arguments

MSEobj

An object of class MSE

YVar

What to plot on the y-axis? Options are: c('SSB_SSB0', 'SSB_SSBMSY', 'F_FMSY', 'Yield')

MPs

Optional subset by MP

sims

Optional subset by simulation

traj

Plot all projections (all), only quantiles (quant), or both projections and median (both)

quants

Numeric vector of length 2 specifying the quantiles (e.g., 10th and 90th. Median is always included)

incquant

Logical. Include the quantiles or only plot median?

quantcol

Colour of the quantile polygon

RefYield

Should yield be relative to long-term optimum (lto) or last historical year (curr)

LastYr

Logical. Include the last historical year in the yield projections?

ref.lines

Numeric vector of y-values for horizontal reference lines. Set to NULL to remove lines.

maxMP

Maximum number of MPs to plot

alpha

Alpha for transparency of lines

cex.axis

Size of axis text

cex.lab

Size of axis label

YLab

Optional label for y-axis

incMP

Logical. Include name of MP?

MPcex

Size of MP label

MPcol

Optional character vector of colors for MP labels

incLeg

Logical. Include a legend?

cex.leg

Size of legend text

legPos

Legend position

yline

Optional horizontal lines

xline

Optional vertical lines

parOR

Logical to over-ride the par parameters

xaxis

Logical. Should x-axis labels be displayed?

yaxis

Logical. Should y-axis labels be displayed?

oneIt

Logical. Should one iteration be plotted on the quantile plot?

...

Additional arguments to be passed to plotting functions

Author(s)

T. Carruthers & A.Hordyk