| Awatea2OM {MSEtool} | R Documentation |
Reads MCMC estimates from Awatea (Paul Starr) processed r file structure into an operating model
Description
A function that generates an operating model from the MCMC samples of an Awatea model. Code optimized for the BC Pacific ocean perch assessment (Haigh et al. 2018).
Usage
Awatea2OM(
AwateaDir,
nsim = 48,
proyears = 50,
Name = "OM made by Awatea2OM",
Source = "No source provided",
Author = "No author provided",
verbose = TRUE
)
Arguments
AwateaDir |
A folder with Awatea files |
nsim |
The number of simulations |
proyears |
The number of projection years for the MSE |
Name |
The name of the operating model |
Source |
Reference to assessment documentation e.g. a url |
Author |
Who did the assessment |
verbose |
Return detailed messages? |
Details
This function averages biological parameters across sex and then sends arrays to VPA2OM, assumes unfished status (B/B0 = 1) in the first year, and assumes a single fishing fleet.
Author(s)
Q. Huynh and T. Carruthers
References
Haigh, R., et al. 2018. Stock assessment for Pacific Ocean Perch (Sebastes alutus) in Queen Charlotte Sound, British Columbia in 2017. Canadian Science Advisory Secretariat (CSAS) Research Document 2018/038. 232 pp. https://www.dfo-mpo.gc.ca/csas-sccs/Publications/ResDocs-DocRech/2018/2018_038-eng.html