R: Convert ASAP 3 assessments into an operating model

ASAP2OM {MSEtool}

R Documentation

Convert ASAP 3 assessments into an operating model

Description

Reads a fitted ASAP model and uses the MLE estimates with identical reconstruction among simulations. Future recruitment is sampled from a lognormal distribution with autocorrelation. ASAP2Data imports a Data object.

Usage

ASAP2OM(
  asap,
  nsim = 48,
  proyears = 50,
  mcmc = FALSE,
  Name = "ASAP Model",
  Source = "No source provided",
  nyr_par_mu = 3,
  Author = "No author provided",
  report = FALSE,
  silent = FALSE
)

ASAP2Data(asap, Name = "ASAP assessment")

Arguments

`asap`	A list returned by ASAP, e.g., `asap <- dget("asap3.rdat")`.
`nsim`	The number of simulations in the operating model
`proyears`	The number of MSE projection years
`mcmc`	Logical, whether to use mcmc samples. Currently unsupported.
`Name`	The name of the operating model
`Source`	Reference to assessment documentation e.g. a url
`nyr_par_mu`	integer, the number of recent years to estimate vulnerability over for future projections
`Author`	Who did the assessment
`report`	Logical, should a comparison of biomass reconstruction be produced?
`silent`	Logical, should progress reporting be printed to the console?

Details

Length at age is not used in ASAP so arbitrary placeholder values are used for length-based parameters. Update these parameters to model length in the operating model.

Value

An operating model OM class.

Author(s)

Q. Huynh