QTLDetectionExample {MM4LMM}

QTL Detection Example

Description

This corresponds to (a sample of) the dataset presented in Rincent et al. (2014).

Usage

data("QTLDetectionExample")

Format

The format is: List of 3

Phenotype

Named num [1:259]

Genotype

int [1:259,1:10]

Kinship

num [1:259,1:259]

Details

The list contains three elements:

• Phenotype: a numeric vector containing phenotypes of individuals

• Genotype: a matrix containing the genotypes of indviduals over 10 biallelic markers

• Kinship: a matrix of simple relatedness coefficients between individuals

Source

https://link.springer.com/article/10.1007/s00122-014-2379-7

References

Rincent, R., Nicolas, S., Bouchet, S., Altmann, T., Brunel, D., Revilla, P., ... & Schipprack, W. (2014). Dent and Flint maize diversity panels reveal important genetic potential for increasing biomass production. Theoretical and applied genetics, 127(11), 2313-2331.

Examples

data(QTLDetectionExample)
names(QTLDetectionExample)
## maybe str(QTLDetectionExample) ; plot(QTLDetectionExample) ...