GSE37418Expr {MM2Sdata}

Normalized gene expression data for Human MB (GSE37418).

Description

Gene expression for 10 primary Medulloblastoma human samples, normalized using expresso and BrainArray CDFs (see references for details).

PLEASE NOTE: The full processed GSE37418 dataset, which contains 76 samples, can be accessed from the following locations: https://github.com/DGendoo/MM2Sdata http://www.pmgenomics.ca/bhklab/software/mm2s

Usage

data(GSE37418Expr)

Value

Data and annotations are organized in a ExpressionSet of the package Biobase.

pData

phenoData containing human sample MB subgroup (obtained from GEOquery of the GSE37418)

exprs

ExpressionSet with 19764 EntrezIds and 10 samples

fData

List of 19764 EntrezIds

Source

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE37418

References

Gendoo, D. M., Smirnov, P., Lupien, M. & Haibe-Kains, B. Personalized diagnosis of medulloblastoma subtypes across patients and model systems. Genomics, doi:10.1016/j.ygeno.2015.05.002 (2015)

Manuscript URL: http://www.sciencedirect.com/science/article/pii/S0888754315000774

Examples

data(GSE37418Expr)

# To install from github, please run the following commands in your R terminal:
# library(Biobase)
# library(devtools)
# install_github(repo="DGendoo/MM2Sdata")
# data(GSE37418Expr)