select.thres {MHTmult} | R Documentation |
Selecting Threshold for cFDR Controlling Procedures
Description
Given the structural p-values, choose a selecting method for controlling generalized familywise error rate or false discovery rate across families, and a combining mehtod, returns a vector of thresholds for the first stage of cFDR controlling procedures.
Usage
select.thres(pval, select.method, comb.method, alpha, k)
Arguments
pval |
the structural p-values, the type should be |
select.method |
global p-value selecting methods. For generalized FWER controlling, k-Bonferroni or k-Sidak procedures can be used; for FDR controlling, BH procedure can be used. |
comb.method |
p-value combining methods including |
alpha |
significant level for selecting significant families in the first stage. The default value is 0.05. |
k |
number of allowed type 1 errors in k-FWER controls. |
Value
A list of the adjusted conditional p-values, a list of NULL
means the family is not selected to do the test in the second stage.
Author(s)
Yalin Zhu