gbonf.p.adjust {MHTmult}

Adjusted P-Values for the Generalized Bonferroni Procedure Controlling k-FWER

Description

The function for computing the adjusted p-values based on original p-values and fold k.

Usage

gbonf.p.adjust(p, k, alpha, make.decision)

Arguments

p

numeric vector of p-values (possibly with NAs). Any other R is coerced by as.numeric. Same as in p.adjust.

k

number of allowed type 1 errors in k-FWER controls.

alpha

significant level used to compare with adjusted p-values to make decisions, the default value is 0.05.

make.decision

logical; if TRUE, then the output include the decision rules compared adjusted p-values with significant level \alpha

Value

A numeric vector of the adjusted p-values (of the same length as p) if make.decision = FALSE, or a list including original p-values, adjusted p-values and decision rules if make.decision = TRUE.

Author(s)

Yalin Zhu

References

Lehmann, E. L., & Romano, J. P. (2005). Generalizations of the familywise error rate. The Annals of Statistics, 33: 1138-1154.

See Also

gsidak.p.adjust, p.adjust, Sidak.p.adjust.

Examples

p <- c(0.031,0.023,0.029,0.005,0.031,0.000,0.874,0.399,0.293,0.077)
gbonf.p.adjust(p, k=2)