Tarone.p.adjust {MHTdiscrete}

The adjusted p-values for Tarone's single-step FWER controlling procedure.

Description

The function for calculating the adjusted p-values based on original available p-values and all attaianble p-values.

Usage

Tarone.p.adjust(p, p.set, alpha, make.decision)

Arguments

p

numeric vector of p-values (possibly with NAs). Any other R is coerced by as.numeric. Same as in p.adjust.

p.set

a list of numeric vectors, where each vector is the vector of all attainable p-values containing the available p-value for the corresponding hypothesis.

alpha

significant level used to compare with adjusted p-values to make decisions, the default value is 0.05.

make.decision

logical; if TRUE, then the output include the decision rules compared adjusted p-values with significant level \alpha

Value

A numeric vector of the adjusted p-values (of the same length as p) if make.decision = FALSE, or a list including original p-values, adjusted p-values and decision rules if make.decision = TRUE.

Author(s)

Yalin Zhu

References

Tarone, R. E. (1990). A modified Bonferroni method for discrete data. Biometrics, 46: 515-522.

See Also

MBonf.p.adjust, MixBonf.p.adjust, p.adjust.

Examples

p <- c(pbinom(1,8,0.5),pbinom(1,5,0.75),pbinom(1,6,0.6))
p.set <-list(pbinom(0:8,8,0.5),pbinom(0:5,5,0.75),pbinom(0:6,6,0.6))
Tarone.p.adjust(p,p.set)