| GetReplTable {MHCtools} | R Documentation |
GetReplTable function
Description
GetReplTable uses the output files produced by the ReplMatch()
function to produce a table with the replicate sets and their respective mean
proportion of incongruent sequences.
Usage
GetReplTable(filepath)
Arguments
filepath |
is a user defined path to the folder where the output files from the ReplMatch() function have been saved. |
Details
If you publish data or results produced with MHCtools, please cite both of the following references: Roved, J. 2022. MHCtools: Analysis of MHC data in non-model species. Cran. Roved, J., Hansson, B., Stervander, M., Hasselquist, D., & Westerdahl, H. 2022. MHCtools - an R package for MHC high-throughput sequencing data: genotyping, haplotype and supertype inference, and downstream genetic analyses in non-model organisms. Molecular Ecology Resources. https://doi.org/10.1111/1755-0998.13645
Value
A table with the mean proportion of incongruent sequences for each replicate set.
See Also
Examples
filepath <- system.file("extdata/ReplMatchOut/", package="MHCtools")
GetReplTable(filepath)