| GetHpltStats {MHCtools} | R Documentation |
GetHpltStats() function
Description
GetHpltStats uses the output files produced by the HpltFind()
function to calculate the mean of the mean proportion of incongruent
sequences across all nests in the data set.
Usage
GetHpltStats(filepath)
Arguments
filepath |
is a user defined path to the folder where the output files from the HpltFind() function have been saved. |
Details
If you publish data or results produced with MHCtools, please cite both of the following references: Roved, J. 2022. MHCtools: Analysis of MHC data in non-model species. Cran. Roved, J., Hansson, B., Stervander, M., Hasselquist, D., & Westerdahl, H. 2022. MHCtools - an R package for MHC high-throughput sequencing data: genotyping, haplotype and supertype inference, and downstream genetic analyses in non-model organisms. Molecular Ecology Resources. https://doi.org/10.1111/1755-0998.13645
Value
A mean of the mean proportion of incongruent sequences for each nest.
See Also
Examples
filepath <- system.file("extdata/HpltFindOut/", package="MHCtools")
GetHpltStats(filepath)