beckham.data {MCMC.qpcr}

Cellular heat stress response data.

Description

A typical qRT-PCR dataset where a series of treatments are compared to the global control.

Usage

data(beckham.data)

Format

A data frame with 45 observations on the following 13 variables.

sample

cDNA sample (biological replicate): a factor with levels a b c d e f g h i j k l m n o

tr

treatment: a factor with levels ctl:control hs:heat stress pshs:pre-stress followed by heat stress

time

hours of heat stress exposure: a numeric vector

gapdh

a numeric vector

hsp110

a numeric vector

hspb

a numeric vector

egr

a numeric vector

gadd

a numeric vector

dnajb1

a numeric vector

dnajb4

a numeric vector

atf

a numeric vector

dnaja4

a numeric vector

fos

a numeric vector

Details

Includes global control (ctl), heat stressed cells (hs), and cells pre-stressed by mild heating prior to heat stress (pshs). Two time points: one hour and three hours.

Source

data for Figure 6 in Beckham et al. Microarray analysis of cellular thermotolerance. Lasers Surg Med. 2010 Dec;42(10):752-65. doi: 10.1002/lsm.20983

Examples

data(beckham.data)